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Structure of hyperthermophilic family 12 endocellulase from Pyrococcus furiosus in complex with gluco-oligosaccharide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 303 0.12M CHES, 0.5M potassium sodium tartrate, 0.15M lithium sulfate, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 303.0K
Crystal Properties Matthews coefficient Solvent content 2.22 44.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.9 α = 90 b = 118.18 β = 90 c = 46.7 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX225HE 2011-10-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 0.9000 SPring-8 BL44XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.22 16 98.8 0.112 16.1 13.6 94867 94867
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.22 1.29 100 0.358 0.358 0.099 2 13.9 13876
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.22 15.97 94805 4746 98.65 0.1186 0.1172 0.146 0.1525 RANDOM 13.564
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.79 -0.03 -0.77
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 53.35 r_dihedral_angle_2_deg 35.923 r_dihedral_angle_4_deg 18.263 r_sphericity_bonded 15.771 r_dihedral_angle_3_deg 12.159 r_rigid_bond_restr 8.64 r_dihedral_angle_1_deg 7.319 r_angle_refined_deg 2.258 r_chiral_restr 0.165 r_bond_refined_d 0.023
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 53.35 r_dihedral_angle_2_deg 35.923 r_dihedral_angle_4_deg 18.263 r_sphericity_bonded 15.771 r_dihedral_angle_3_deg 12.159 r_rigid_bond_restr 8.64 r_dihedral_angle_1_deg 7.319 r_angle_refined_deg 2.258 r_chiral_restr 0.165 r_bond_refined_d 0.023 r_gen_planes_refined 0.016
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2163 Nucleic Acid Atoms Solvent Atoms 301 Heterogen Atoms 91
Software Software Software Name Purpose SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection MOSFLM data reduction