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Crystal structure of the DAP BII (S657A)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9.5 293 18% PEG8000, 20% Glycerol, 2mM ZnCl2, 80mM CHES, pH 9.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.56 52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.9 α = 90 b = 119.9 β = 90 c = 226.78 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 315r 2011-10-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 0.97897 Photon Factory BL-17A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 30 98.3 90336 2 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.1 30 90336 4754 98.15 0.15809 0.15567 0.1674 0.2031 0.2097 RANDOM 34.236
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 0.11 -0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.29 r_dihedral_angle_3_deg 15.66 r_dihedral_angle_4_deg 11.472 r_long_range_B_refined 7.526 r_long_range_B_other 7.389 r_dihedral_angle_1_deg 6.694 r_scangle_other 6.055 r_scbond_it 4.071 r_scbond_other 4.071 r_mcangle_it 3.707
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.29 r_dihedral_angle_3_deg 15.66 r_dihedral_angle_4_deg 11.472 r_long_range_B_refined 7.526 r_long_range_B_other 7.389 r_dihedral_angle_1_deg 6.694 r_scangle_other 6.055 r_scbond_it 4.071 r_scbond_other 4.071 r_mcangle_it 3.707 r_mcangle_other 3.707 r_mcbond_it 2.762 r_mcbond_other 2.753 r_angle_refined_deg 1.858 r_angle_other_deg 0.869 r_chiral_restr 0.108 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10734 Nucleic Acid Atoms Solvent Atoms 1008 Heterogen Atoms 48
Software Software Software Name Purpose HKL-2000 data collection SHARP phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling