☰ Navigation Tabs
Mineralocorticoid receptor ligand-binding domain with compuond 2e
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3VHV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.8 293 0.1M Tris, 23% ethanol, pH 7.8, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.32 46.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.403 α = 90 b = 66.813 β = 90 c = 75.252 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2008-06-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 0.976486 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 50 96.4 0.058 22.9 4.8 56402
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.43 74.7 0.369 2.6 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3VHV 1.4 46.14 53493 2844 96.25 0.16466 0.16387 0.1626 0.1791 0.1769 RANDOM 14.999
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.86 5.46 -3.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.067 r_dihedral_angle_3_deg 11.222 r_dihedral_angle_4_deg 9.503 r_dihedral_angle_1_deg 4.67 r_long_range_B_refined 4.448 r_long_range_B_other 4.249 r_scangle_other 2.486 r_scbond_it 1.615 r_scbond_other 1.615 r_angle_refined_deg 1.452
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.067 r_dihedral_angle_3_deg 11.222 r_dihedral_angle_4_deg 9.503 r_dihedral_angle_1_deg 4.67 r_long_range_B_refined 4.448 r_long_range_B_other 4.249 r_scangle_other 2.486 r_scbond_it 1.615 r_scbond_other 1.615 r_angle_refined_deg 1.452 r_mcangle_other 1.22 r_mcangle_it 1.218 r_angle_other_deg 0.798 r_mcbond_it 0.744 r_mcbond_other 0.728 r_chiral_restr 0.083 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2040 Nucleic Acid Atoms Solvent Atoms 200 Heterogen Atoms 77
Software Software Software Name Purpose MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling