☰ Navigation Tabs
Crystal structure of RsbX in complex with magnesium in space group P1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3W45 PDB ENTRY 3W45
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8.5 298 20% PEG 1000, 0.1M Tris-HCl, 5mM MgCl2, pH 8.5, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2 38.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.081 α = 81 b = 41.608 β = 90.01 c = 69.038 γ = 71.14
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4r 2006-12-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-6A 1.0000 Photon Factory BL-6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 50 90 0.076 2.8 75857 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.35 68.4 0.325 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3W45 1.3 20 75821 3785 89.74 0.1791 0.1764 0.1754 0.2288 0.2269 RANDOM 15.0362
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.41 -0.8 0.28 0.76 -0.16 -0.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.071 r_dihedral_angle_3_deg 13.492 r_dihedral_angle_4_deg 12.779 r_scangle_it 6.678 r_dihedral_angle_1_deg 6.639 r_scbond_it 4.596 r_mcangle_it 3.125 r_rigid_bond_restr 2.218 r_mcbond_it 2.11 r_angle_refined_deg 1.779
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.071 r_dihedral_angle_3_deg 13.492 r_dihedral_angle_4_deg 12.779 r_scangle_it 6.678 r_dihedral_angle_1_deg 6.639 r_scbond_it 4.596 r_mcangle_it 3.125 r_rigid_bond_restr 2.218 r_mcbond_it 2.11 r_angle_refined_deg 1.779 r_chiral_restr 0.126 r_bond_refined_d 0.017 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3108 Nucleic Acid Atoms Solvent Atoms 600 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction BSS data collection HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing