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Crystal Structure of BxlE from Streptomyces thermoviolaceus OPC-520
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 3.2 293 25% PEG 3350, 0.1M citrate, pH 3.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.96 37.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.634 α = 90 b = 63.272 β = 103.05 c = 66.402 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray IMAGE PLATE RIGAKU RAXIS VII M MAD 2 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU SPring-8 BL41XU 2 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.65 34.2 91.3 0.026 43438 39659 2 1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.85 29.31 27160 1419 92.55 0.19202 0.18955 0.1882 0.23997 0.24 RANDOM 24.313
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.544 r_dihedral_angle_4_deg 16.344 r_dihedral_angle_3_deg 15.048 r_dihedral_angle_1_deg 6.042 r_scangle_it 5.292 r_scbond_it 3.421 r_mcangle_it 2.072 r_angle_refined_deg 1.835 r_mcbond_it 1.228 r_chiral_restr 0.136
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.544 r_dihedral_angle_4_deg 16.344 r_dihedral_angle_3_deg 15.048 r_dihedral_angle_1_deg 6.042 r_scangle_it 5.292 r_scbond_it 3.421 r_mcangle_it 2.072 r_angle_refined_deg 1.835 r_mcbond_it 1.228 r_chiral_restr 0.136 r_bond_refined_d 0.023 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3046 Nucleic Acid Atoms Solvent Atoms 78 Heterogen Atoms 24
Software Software Software Name Purpose CrystalClear data collection SOLVE phasing REFMAC refinement CrystalClear data reduction CrystalClear data scaling