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Crystal structure of 6-aminohexanoate-dimer hydrolase G181D/R187G/H266N/D370Y mutant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 283 2.2M AMMONIUM SULFATE, 0.2M LITHIUM SULFATE, 0.1M MES, pH 6.5, vapor diffusion, sitting drop, temperature 283K
Crystal Properties Matthews coefficient Solvent content 3.56 65.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.64 α = 90 b = 96.64 β = 90 c = 112.996 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2009-10-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 1.0000 Photon Factory BL-17A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 50 100 0.058 18.3 10.1 189410 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.22 99.8 0.536 5.7 9366
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.2 50 189172 9503 99.79 0.1303 0.1295 0.1389 0.1458 0.153 RANDOM 21.6356
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.07 0.04 0.07 -0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.901 r_dihedral_angle_4_deg 19.257 r_dihedral_angle_3_deg 11.297 r_scangle_it 8.619 r_dihedral_angle_1_deg 6.061 r_scbond_it 6.034 r_mcangle_it 4.632 r_rigid_bond_restr 3.432 r_mcbond_it 3.361 r_angle_refined_deg 2.361
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.901 r_dihedral_angle_4_deg 19.257 r_dihedral_angle_3_deg 11.297 r_scangle_it 8.619 r_dihedral_angle_1_deg 6.061 r_scbond_it 6.034 r_mcangle_it 4.632 r_rigid_bond_restr 3.432 r_mcbond_it 3.361 r_angle_refined_deg 2.361 r_chiral_restr 0.391 r_bond_refined_d 0.028 r_gen_planes_refined 0.017
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2958 Nucleic Acid Atoms Solvent Atoms 429 Heterogen Atoms 84
Software Software Software Name Purpose SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction