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Crystal structure of complex form between S324A-subtilisin and mutant Tkpro
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2Z30
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 0.1M Sodium cacodylate, 0.2M Zinc acetate, 2% PEG4000, pH6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2 38.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.051 α = 90 b = 68.583 β = 90 c = 74.054 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2011-07-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 1.0 SPring-8 BL44XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.83 50 96.7 28926 5 5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.83 1.86 93.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2Z30 1.83 31.12 27383 1476 96.79 0.22103 0.21847 0.2273 0.26806 0.2738 RANDOM 27.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 -0.04 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.39 r_dihedral_angle_4_deg 20.098 r_dihedral_angle_3_deg 14.89 r_dihedral_angle_1_deg 6.764 r_scangle_it 4.247 r_scbond_it 2.866 r_mcangle_it 1.856 r_angle_refined_deg 1.823 r_mcbond_it 1.165 r_chiral_restr 0.128
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.39 r_dihedral_angle_4_deg 20.098 r_dihedral_angle_3_deg 14.89 r_dihedral_angle_1_deg 6.764 r_scangle_it 4.247 r_scbond_it 2.866 r_mcangle_it 1.856 r_angle_refined_deg 1.823 r_mcbond_it 1.165 r_chiral_restr 0.128 r_bond_refined_d 0.024 r_gen_planes_refined 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2826 Nucleic Acid Atoms Solvent Atoms 109 Heterogen Atoms 9
Software Software Software Name Purpose BL44 data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling