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Crystal Structure of cucumisin, a subtilisin-like endoprotease from Cucumis melo L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 0.1M imidazole, 0.8M sodium acetate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.53 65.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 149.483 α = 90 b = 149.483 β = 90 c = 218.035 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD RAYONIX MX225HE 2010-05-19 M SINGLE WAVELENGTH 2 1 x-ray CCD ADSC QUANTUM 210 2009-05-18 M MAD 3 1 x-ray CCD ADSC QUANTUM 210 2010-01-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL32XU 1.0 SPring-8 BL32XU 2 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.06978, 1.07195, 1.05375 Photon Factory AR-NW12A 3 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.0 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2,3 2.75 50 100 0.158 12.1 4.6 46877 -3 48.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2,3 2.75 2.8 100 0.591 4.5 2291
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.75 44.64 46860 2331 99.9 0.214 0.214 0.2199 0.262 0.2614 RANDOM 49.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.89 11.59 5.89 -11.77
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 24.7 c_scangle_it 2.85 c_mcangle_it 2.43 c_scbond_it 1.8 c_angle_deg 1.4 c_mcbond_it 1.4 c_improper_angle_d 0.94 c_bond_d 0.007 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 24.7 c_scangle_it 2.85 c_mcangle_it 2.43 c_scbond_it 1.8 c_angle_deg 1.4 c_mcbond_it 1.4 c_improper_angle_d 0.94 c_bond_d 0.007 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8938 Nucleic Acid Atoms Solvent Atoms 206 Heterogen Atoms 178
Software Software Software Name Purpose HKL-2000 data collection SOLVE phasing CNS refinement HKL-2000 data reduction HKL-2000 data scaling