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Crystal Structure of O-phosphoserine sulfhydrylase without acetate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 296 0.1M HEPES sodium pH 7.5, 27% 2-propanol, 12% PEG 4000, 5mM 2-mercaptoethanol, vapor diffusion, hanging drop, temperature 296K
Crystal Properties Matthews coefficient Solvent content 2.28 46.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.506 α = 90 b = 74.506 β = 90 c = 275.988 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 rhodium-coated mirrors (horizontal and vertical) 2009-04-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 0.90000 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.07 50 99.2 0.079 9.3 8.7 48137 24.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.07 2.14 98.7 0.302 5.8 4672
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.07 39.14 48090 2427 99.34 0.1702 0.1674 0.1677 0.224 0.2238 RANDOM 31.9875
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.2 0.2 -0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.691 r_dihedral_angle_4_deg 21.037 r_dihedral_angle_3_deg 17.64 r_dihedral_angle_1_deg 6.599 r_scangle_it 4.997 r_scbond_it 3.147 r_angle_refined_deg 2.06 r_mcangle_it 1.966 r_mcbond_it 1.127 r_chiral_restr 0.232
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.691 r_dihedral_angle_4_deg 21.037 r_dihedral_angle_3_deg 17.64 r_dihedral_angle_1_deg 6.599 r_scangle_it 4.997 r_scbond_it 3.147 r_angle_refined_deg 2.06 r_mcangle_it 1.966 r_mcbond_it 1.127 r_chiral_restr 0.232 r_bond_refined_d 0.023 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5834 Nucleic Acid Atoms Solvent Atoms 276 Heterogen Atoms 38
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing