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Crystal Structure of Neurexin 1beta/Neuroligin 1 complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 0.1M sodium chloride, 0.005M calcium chloride, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.6 52.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.261 α = 90 b = 95.186 β = 108.62 c = 120.396 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2008-02-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 1.0000 Photon Factory BL-17A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.3 48.91 97.3 3.7 25519 -3 58.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.3 3.48 93.7 0.311 4.3 3.7 3541
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.3 48.91 22921 2586 96.78 0.21365 0.20524 0.2869 0.2575 RANDOM 66.469
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.22 -1.32 0.02 0.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.123 r_dihedral_angle_3_deg 17.007 r_dihedral_angle_4_deg 15.609 r_dihedral_angle_1_deg 5.323 r_angle_refined_deg 1.046 r_scangle_it 0.656 r_mcangle_it 0.41 r_scbond_it 0.388 r_nbtor_refined 0.305 r_mcbond_it 0.225
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.123 r_dihedral_angle_3_deg 17.007 r_dihedral_angle_4_deg 15.609 r_dihedral_angle_1_deg 5.323 r_angle_refined_deg 1.046 r_scangle_it 0.656 r_mcangle_it 0.41 r_scbond_it 0.388 r_nbtor_refined 0.305 r_mcbond_it 0.225 r_nbd_refined 0.196 r_metal_ion_refined 0.165 r_symmetry_vdw_refined 0.157 r_xyhbond_nbd_refined 0.122 r_chiral_restr 0.071 r_symmetry_hbond_refined 0.055 r_bond_refined_d 0.007 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11251 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 69
Software Software Software Name Purpose ADSC data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling