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Green-fluorescent variant of the non-fluorescent chromoprotein Rtms5
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MOU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 0.36M KI, 0.2M TRIS, PH 8.5, 21% PEG 3350, 25% GLYCEROL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
Crystal Properties Matthews coefficient Solvent content 3.08 60.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.12 α = 90 b = 93.12 β = 90 c = 76.91 γ = 90
Symmetry Space Group P 42 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2008-06-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.956600 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 36.62 98.9 0.068 15.88 17621 -3 50.905
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.25 99 0.967 1.049 1.91
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1MOU 2.2 36.62 17621 881 100 0.2071 0.2052 0.2056 0.2421 0.2474 RANDOM 52.7268
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.31 -2.31 4.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.634 r_dihedral_angle_3_deg 15.008 r_dihedral_angle_4_deg 9.722 r_dihedral_angle_1_deg 7.599 r_scangle_it 4.479 r_scbond_it 3.078 r_angle_refined_deg 1.981 r_mcangle_it 1.958 r_mcbond_it 1.142 r_chiral_restr 0.145
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.634 r_dihedral_angle_3_deg 15.008 r_dihedral_angle_4_deg 9.722 r_dihedral_angle_1_deg 7.599 r_scangle_it 4.479 r_scbond_it 3.078 r_angle_refined_deg 1.981 r_mcangle_it 1.958 r_mcbond_it 1.142 r_chiral_restr 0.145 r_bond_refined_d 0.023 r_gen_planes_refined 0.012
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1710 Nucleic Acid Atoms Solvent Atoms 135 Heterogen Atoms 4
Software Software Software Name Purpose XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction Blu-Ice data collection XDS data reduction