☰ Navigation Tabs
Green-fluorescent variant of the non-fluorescent chromoprotein Rtms5
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MOU PDB ENTRY 1MOU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 22% PEG 3350, 0.34M POTASSIUM IODIDE, 0.2M TRIS, PH 8.50, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.0K
Crystal Properties Matthews coefficient Solvent content 2.98 58.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 150.271 α = 90 b = 186.06 β = 90 c = 185.15 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2006-04-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-BM 1.0 APS 17-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 117.04 130290
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1MOU 2.2 54.8 130290 124333 6587 99.97 0.16189 0.15964 0.1578 0.20447 0.2019 RANDOM 32.179
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.41 -1.9 -0.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.87 r_dihedral_angle_3_deg 15 r_dihedral_angle_4_deg 12.69 r_dihedral_angle_1_deg 7.357 r_scangle_it 4.366 r_scbond_it 3.721 r_mcangle_it 2.547 r_angle_refined_deg 2.022 r_mcbond_it 1.717 r_chiral_restr 0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.87 r_dihedral_angle_3_deg 15 r_dihedral_angle_4_deg 12.69 r_dihedral_angle_1_deg 7.357 r_scangle_it 4.366 r_scbond_it 3.721 r_mcangle_it 2.547 r_angle_refined_deg 2.022 r_mcbond_it 1.717 r_chiral_restr 0.13 r_bond_refined_d 0.024 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13975 Nucleic Acid Atoms Solvent Atoms 1443 Heterogen Atoms 24
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing REFMAC refinement HKL-2000 data reduction SCALA data scaling