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Crystal structure of SigD4 in complex with its negative regulator RsdA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 OIL-BATCH 7.4 300 1.0-103M Ammonium Sulphate, 0.1M HEPES, 15-20% PEG 4000, pH 7.4, OIL-BATCH, temperature 300K
Crystal Properties Matthews coefficient Solvent content 2.01 38.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.74 α = 90 b = 110.72 β = 133 c = 73.13 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Mirror 2010-06-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.978 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 38.465 86.4 0.068 15.6 7.7 18114 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 98 0.442 4.4 7.7
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD 2.5 38.465 4 2 17437 902 86.6 0.245 0.2427 0.2517 0.2866 0.2687 RANDOM 53.6172
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 9.0236 -1.4024 -12.816 3.7924
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 19.792 f_angle_d 1.606 f_chiral_restr 0.135 f_bond_d 0.012 f_plane_restr 0.012
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3563 Nucleic Acid Atoms Solvent Atoms 52 Heterogen Atoms 65
Software Software Software Name Purpose HKL-2000 data collection SOLVE phasing PHENIX refinement MOSFLM data reduction SCALA data scaling