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Structure of U2AF65 variant with BrU5C2 DNA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277 1.6M Ammonium sulfate, 10% Dioxane, 0.1M MES pH 6.5, Deoxy-Big Chap, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.1 60.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 166.108 α = 90 b = 37.973 β = 125.49 c = 101.974 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 Rh coated Si vertical focus mirror 2007-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE A1 0.987 CHESS A1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 99.5 0.086 22 5.1 20311 -1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.49 99.8 0.401 4.8 1988
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.4 41.52 21228 19317 1911 93.02 0.198 0.1938 0.2375 0.2498 RANDOM 41.9785
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.62 1.06 0.97 0.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.322 r_dihedral_angle_4_deg 15.983 r_dihedral_angle_3_deg 15.486 r_dihedral_angle_1_deg 5.768 r_scangle_it 1.979 r_angle_refined_deg 1.304 r_scbond_it 1.212 r_angle_other_deg 0.909 r_mcangle_it 0.632 r_mcbond_it 0.532
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.322 r_dihedral_angle_4_deg 15.983 r_dihedral_angle_3_deg 15.486 r_dihedral_angle_1_deg 5.768 r_scangle_it 1.979 r_angle_refined_deg 1.304 r_scbond_it 1.212 r_angle_other_deg 0.909 r_mcangle_it 0.632 r_mcbond_it 0.532 r_symmetry_vdw_other 0.243 r_nbd_other 0.185 r_nbtor_refined 0.177 r_nbd_refined 0.176 r_xyhbond_nbd_refined 0.13 r_symmetry_hbond_refined 0.097 r_symmetry_vdw_refined 0.088 r_nbtor_other 0.082 r_mcbond_other 0.075 r_chiral_restr 0.071 r_bond_refined_d 0.01 r_bond_other_d 0.004 r_gen_planes_refined 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2675 Nucleic Acid Atoms 230 Solvent Atoms 127 Heterogen Atoms 94
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection