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Structure of U2AF65 variant with BrU5 DNA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277 1.6M Ammonium sulfate, 10% Dioxane, 0.1M MES pH 6.5, Deoxy-Big Chap, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.07 59.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 166.406 α = 90 b = 37.726 β = 125.43 c = 101.631 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 Rh coated Si vertical focus mirror 2007-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE A1 0.987 CHESS A1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.16 50 98.9 0.14 18.7 5.7 27427 -1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.16 2.24 92.1 0.365 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.17 41.42 29877 24457 2710 97.69 0.1924 0.18837 0.2057 0.22944 0.2384 RANDOM 28.7193
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.7 1.01 -1.33 3.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.638 r_dihedral_angle_4_deg 16.451 r_dihedral_angle_3_deg 13.951 r_dihedral_angle_1_deg 5.249 r_scangle_it 1.917 r_angle_refined_deg 1.257 r_angle_other_deg 1.187 r_scbond_it 1.152 r_mcangle_it 0.653 r_mcbond_it 0.571
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.638 r_dihedral_angle_4_deg 16.451 r_dihedral_angle_3_deg 13.951 r_dihedral_angle_1_deg 5.249 r_scangle_it 1.917 r_angle_refined_deg 1.257 r_angle_other_deg 1.187 r_scbond_it 1.152 r_mcangle_it 0.653 r_mcbond_it 0.571 r_nbd_other 0.179 r_symmetry_hbond_refined 0.179 r_nbd_refined 0.176 r_nbtor_refined 0.174 r_symmetry_vdw_other 0.152 r_xyhbond_nbd_refined 0.133 r_symmetry_vdw_refined 0.123 r_nbtor_other 0.08 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_chiral_restr r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2686 Nucleic Acid Atoms 262 Solvent Atoms 272 Heterogen Atoms 116
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection