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Structure of U2AF65 variant with BrU5C6 DNA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277 1.6M Ammonium sulfate, 10% Dioxane, 0.1M MES pH 6.5, Deoxy-Big Chap, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.91 57.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 163.869 α = 90 b = 36.966 β = 125.66 c = 99.992 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2009-01-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 1.00 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 98.8 0.075 18.6 3.5 38838 -1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 92.6 0.356 3.2 3626
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.9 40.62 40660 37002 3658 94.86 0.1954 0.1911 0.2356 0.2606 RANDOM 33.3794
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.07 -0.05 -0.5 1.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.863 r_dihedral_angle_4_deg 17.072 r_dihedral_angle_3_deg 13.847 r_dihedral_angle_1_deg 5.98 r_scangle_it 2.358 r_scbond_it 1.673 r_angle_refined_deg 1.31 r_angle_other_deg 1.071 r_mcangle_it 0.813 r_mcbond_it 0.724
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.863 r_dihedral_angle_4_deg 17.072 r_dihedral_angle_3_deg 13.847 r_dihedral_angle_1_deg 5.98 r_scangle_it 2.358 r_scbond_it 1.673 r_angle_refined_deg 1.31 r_angle_other_deg 1.071 r_mcangle_it 0.813 r_mcbond_it 0.724 r_symmetry_vdw_other 0.209 r_nbd_other 0.193 r_nbd_refined 0.191 r_nbtor_refined 0.182 r_xyhbond_nbd_refined 0.139 r_mcbond_other 0.121 r_chiral_restr 0.11 r_symmetry_hbond_refined 0.11 r_symmetry_vdw_refined 0.106 r_nbtor_other 0.085 r_xyhbond_nbd_other 0.013 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2686 Nucleic Acid Atoms 262 Solvent Atoms 227 Heterogen Atoms 99
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection