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Nitrite Bound Chlorin Substituted Myoglobin- Method 2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3BA2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.4 295 ammonium sulfate, 100mM TrisHCl, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 1.9 35.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.285 α = 90 b = 30.36 β = 104.94 c = 64.06 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ Osmic 2010-05-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 26.5 97.5 0.038 16.8 3.21 15230 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.71 94.5 0.143 5.9 3.18 1370
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3BA2 1.65 26.5 2 2 14436 14385 795 97.15 0.18647 0.18396 0.1809 0.23202 0.2301 RANDOM 15.878
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.42 -0.07 -0.12 -0.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.989 r_dihedral_angle_4_deg 16.834 r_dihedral_angle_3_deg 14.299 r_scangle_it 5.333 r_dihedral_angle_1_deg 5.316 r_scbond_it 3.47 r_mcangle_it 2.237 r_angle_refined_deg 2.135 r_mcbond_it 1.325 r_chiral_restr 0.139
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.989 r_dihedral_angle_4_deg 16.834 r_dihedral_angle_3_deg 14.299 r_scangle_it 5.333 r_dihedral_angle_1_deg 5.316 r_scbond_it 3.47 r_mcangle_it 2.237 r_angle_refined_deg 2.135 r_mcbond_it 1.325 r_chiral_restr 0.139 r_bond_refined_d 0.022 r_gen_planes_refined 0.013
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1194 Nucleic Acid Atoms Solvent Atoms 137 Heterogen Atoms 58
Software Software Software Name Purpose CrystalClear data collection PHASER phasing REFMAC refinement d*TREK data reduction d*TREK data scaling