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Nitrite Bound Chlorin Substituted Myoglobin- Method 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3BA2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.4 295 ammonium sulfate, 100mM TrisHCl, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 1.9 35.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.432 α = 90 b = 30.519 β = 105.23 c = 63.579 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ Osmic 2010-06-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 26.45 98.7 0.035 17.8 3.13 15443 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.71 95.8 0.163 5.3 3.08 1503
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3BA2 1.65 26.23 2 2 15443 14594 787 98.32 0.1932 0.19177 0.1891 0.2176 0.2154 RANDOM 18.747
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.09 0.19 -0.4 0.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.361 r_dihedral_angle_4_deg 16.978 r_dihedral_angle_3_deg 14.401 r_scangle_it 5.139 r_dihedral_angle_1_deg 4.798 r_scbond_it 3.404 r_mcangle_it 2.267 r_angle_refined_deg 2.017 r_mcbond_it 1.302 r_chiral_restr 0.129
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.361 r_dihedral_angle_4_deg 16.978 r_dihedral_angle_3_deg 14.401 r_scangle_it 5.139 r_dihedral_angle_1_deg 4.798 r_scbond_it 3.404 r_mcangle_it 2.267 r_angle_refined_deg 2.017 r_mcbond_it 1.302 r_chiral_restr 0.129 r_bond_refined_d 0.022 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1194 Nucleic Acid Atoms Solvent Atoms 150 Heterogen Atoms 62
Software Software Software Name Purpose CrystalClear data collection PHASER phasing REFMAC refinement d*TREK data reduction d*TREK data scaling