☰ Navigation Tabs
Crystal Structure of the Peptide Bound Complex of the Ankyrin Repeat Domains of Human ANKRA2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3SO8 PDB ENTRY 3SO8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 291 0.1M Hepes, pH 7.5, 0.2M ammonium acetate, 25% PEG3350, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 1.73 28.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.266 α = 90 b = 49.569 β = 97.52 c = 41.059 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Rosenbaum-Rock high-resolution double-crystal monochromator 2010-03-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97941 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.89 50 95.1 0.096 9.2 4.3 11646
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.89 1.97 76.8 0.263 3.9 927
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3SO8 1.89 40.71 11633 557 94.13 0.2287 0.2266 0.2281 0.2693 0.2714 RANDOM 35.2059
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.79 -1.18 -3.15 -2.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.913 r_dihedral_angle_4_deg 23.259 r_dihedral_angle_3_deg 15.651 r_dihedral_angle_1_deg 4.436 r_scangle_it 3.354 r_scbond_it 1.991 r_angle_refined_deg 1.146 r_mcangle_it 1.142 r_mcbond_it 0.579 r_chiral_restr 0.075
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.913 r_dihedral_angle_4_deg 23.259 r_dihedral_angle_3_deg 15.651 r_dihedral_angle_1_deg 4.436 r_scangle_it 3.354 r_scbond_it 1.991 r_angle_refined_deg 1.146 r_mcangle_it 1.142 r_mcbond_it 0.579 r_chiral_restr 0.075 r_bond_refined_d 0.01 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1273 Nucleic Acid Atoms Solvent Atoms 21 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction EPICS-based data collection data data collection HKL-3000 data reduction HKL-3000 data scaling