☰ Navigation Tabs
Designed protein KE59 R13 3/11H
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3UYC PDB ENTRY 3UYC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 0.2 M potassium thiocyanate, 0.1 M Bis-Tris propane, pH 6.5, 20% PEG3350, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.35 47.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.476 α = 90 b = 123.744 β = 90 c = 45.702 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-08-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.979 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 7.999 98.7 0.149 0.118 11.6 4.5 43819 43250
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.93 97.9 0.567 0.6 2.5 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3UYC 1.9 7.999 40977 40412 2142 98.62 0.18733 0.18401 0.1867 0.25083 0.253 RANDOM 17.817
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.47 0.76 -0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.048 r_dihedral_angle_4_deg 18.429 r_dihedral_angle_3_deg 14.791 r_scangle_it 7.46 r_dihedral_angle_1_deg 5.912 r_scbond_it 5.174 r_mcangle_it 2.969 r_rigid_bond_restr 2.74 r_angle_refined_deg 1.958 r_mcbond_it 1.836
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.048 r_dihedral_angle_4_deg 18.429 r_dihedral_angle_3_deg 14.791 r_scangle_it 7.46 r_dihedral_angle_1_deg 5.912 r_scbond_it 5.174 r_mcangle_it 2.969 r_rigid_bond_restr 2.74 r_angle_refined_deg 1.958 r_mcbond_it 1.836 r_chiral_restr 0.148 r_bond_refined_d 0.025 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3849 Nucleic Acid Atoms Solvent Atoms 110 Heterogen Atoms 44
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling