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Designed protein KE59 R1 7/10H with dichlorobenzotriazole (DBT)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3UYC PDB ENTRY 3UYC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 277 Wizard screen 1 #30: 1.26 M ammonium sulfate, 0.1 M sodium acetate, pH 4.5, 0.2 M sodium chloride, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.33 47.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.127 α = 90 b = 62.127 β = 90 c = 120.128 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2011-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.979 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 40.076 99.8 0.082 0.088 19.4 4.2 48070 47974
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.83 100 0.276 0.221 4.7 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3UYC 1.8 40.076 45506 2421 99.74 0.17851 0.17549 0.1811 0.23312 0.2387 RANDOM 22.156
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.65 -0.32 -0.65 0.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.962 r_dihedral_angle_4_deg 16.105 r_dihedral_angle_3_deg 14.94 r_scangle_it 7.422 r_dihedral_angle_1_deg 5.6 r_scbond_it 4.917 r_mcangle_it 2.856 r_rigid_bond_restr 2.306 r_angle_refined_deg 1.88 r_mcbond_it 1.794
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.962 r_dihedral_angle_4_deg 16.105 r_dihedral_angle_3_deg 14.94 r_scangle_it 7.422 r_dihedral_angle_1_deg 5.6 r_scbond_it 4.917 r_mcangle_it 2.856 r_rigid_bond_restr 2.306 r_angle_refined_deg 1.88 r_mcbond_it 1.794 r_chiral_restr 0.141 r_bond_refined_d 0.024 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3902 Nucleic Acid Atoms Solvent Atoms 166 Heterogen Atoms 62
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling