X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3KE8PDB ENTRY 3KE8

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.52930.1 M BIS-TRIS, 0.2 M ammonia sulfate, 25% PEG3350, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.2344.75

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 70.66α = 90
b = 80.7β = 90
c = 111.79γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELPSI PILATUS 6MMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1.0SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.85099.40.09610.9599635960322
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.997.60.3714.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 3KE81.8505960356621298199.450.188750.184590.26831RANDOM27.041
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.12-2.212.09
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.575
r_sphericity_free29.914
r_dihedral_angle_4_deg21.002
r_sphericity_bonded19.341
r_dihedral_angle_3_deg16.755
r_dihedral_angle_1_deg6.091
r_rigid_bond_restr5.865
r_angle_refined_deg2.084
r_chiral_restr0.145
r_bond_refined_d0.021
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.575
r_sphericity_free29.914
r_dihedral_angle_4_deg21.002
r_sphericity_bonded19.341
r_dihedral_angle_3_deg16.755
r_dihedral_angle_1_deg6.091
r_rigid_bond_restr5.865
r_angle_refined_deg2.084
r_chiral_restr0.145
r_bond_refined_d0.021
r_gen_planes_refined0.01
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4773
Nucleic Acid Atoms
Solvent Atoms455
Heterogen Atoms72

Software

Software
Software NamePurpose
RemDAqdata collection
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
REFMACphasing