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Salmonella typhi osmoporin(OmpC):an Outer Membrane Protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3UPG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 Microbatch under oil 8.5 298.15 0.01M Nickel(II) chloride hexahydrate, 0.1M Tris, 20% PEG MME 2000, pH 8.5, Microbatch under oil, temperature 298.15K
Crystal Properties Matthews coefficient Solvent content 4.22 70.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 182.201 α = 90 b = 108.568 β = 117.83 c = 113.391 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77.03 CCD MARMOSAIC 225 mm CCD 2010-05-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 1.0048 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.33 100.27 95.7 0.11 23 12.1 28544 27261 97.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.59 3.67 93.2 0.526 2.95 9.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3UPG 3.59 50 21573 1170 98.83 0.3049 0.30196 0.3025 0.35808 0.3554 RANDOM 225.198
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.96 -1.66 7.52 -14.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.137 r_dihedral_angle_3_deg 23.251 r_dihedral_angle_4_deg 16.805 r_dihedral_angle_1_deg 7.421 r_scangle_it 1.997 r_angle_refined_deg 1.471 r_scbond_it 1.15 r_mcangle_it 1.104 r_mcbond_it 0.571 r_chiral_restr 0.105
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.137 r_dihedral_angle_3_deg 23.251 r_dihedral_angle_4_deg 16.805 r_dihedral_angle_1_deg 7.421 r_scangle_it 1.997 r_angle_refined_deg 1.471 r_scbond_it 1.15 r_mcangle_it 1.104 r_mcbond_it 0.571 r_chiral_restr 0.105 r_bond_refined_d 0.013 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6988 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose MAR345dtb data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling