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Crystal structure of bacteriorhodopsin mutant Y57F
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BICELLES, VAPOR DIFFUSION, HANGING DROP 4 310 0.65M sodium phosphate, 0.95% triethylene glycerol, 0.008M 1,6-hexanediol, 4.3% DMPC, 1.5% CHAPSO, BICELLES, VAPOR DIFFUSION, HANGING DROP, temperature 310K
Crystal Properties Matthews coefficient Solvent content 2.89 57.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.08 α = 90 b = 104.009 β = 90 c = 129.743 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2010-04-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.97938 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.06 100 100 19418 19418
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.06 2.13 97.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.06 40.07 17856 17856 1560 98.49 0.19707 0.19588 0.1982 0.21044 0.2197 RANDOM 36.603
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.61 0.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.312 r_dihedral_angle_4_deg 19.695 r_dihedral_angle_3_deg 14.986 r_scangle_it 7.167 r_dihedral_angle_1_deg 5.403 r_scbond_it 4.864 r_mcangle_it 3.195 r_mcbond_it 2.159 r_angle_refined_deg 1.952 r_angle_other_deg 1.254
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.312 r_dihedral_angle_4_deg 19.695 r_dihedral_angle_3_deg 14.986 r_scangle_it 7.167 r_dihedral_angle_1_deg 5.403 r_scbond_it 4.864 r_mcangle_it 3.195 r_mcbond_it 2.159 r_angle_refined_deg 1.952 r_angle_other_deg 1.254 r_mcbond_other 0.823 r_chiral_restr 0.224 r_bond_refined_d 0.025 r_gen_planes_refined 0.009 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1755 Nucleic Acid Atoms Solvent Atoms 10 Heterogen Atoms 66
Software Software Software Name Purpose ADSC data collection PHASES phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling