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TPR2B-domain:pHsp70-complex of yeast Sti1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ELR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 0.2 M LiCl, 2.2 M Ammoniumsulfate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.2 44.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.63 α = 90 b = 38.63 β = 90 c = 176.64 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2009-11-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 10 93.5 0.063 15.03 18603 17394 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.7 93.9 0.215 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1ELR 1.6 9.86 17394 16524 870 100 0.191 0.18618 0.18259 0.2016 0.25443 0.2579 RANDOM 14.168
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 -0.05 0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.457 r_dihedral_angle_4_deg 15.922 r_dihedral_angle_3_deg 15.258 r_scangle_it 6.815 r_scbond_it 4.821 r_dihedral_angle_1_deg 4.749 r_rigid_bond_restr 2.639 r_mcangle_it 2.628 r_mcbond_it 1.894 r_angle_refined_deg 1.884
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.457 r_dihedral_angle_4_deg 15.922 r_dihedral_angle_3_deg 15.258 r_scangle_it 6.815 r_scbond_it 4.821 r_dihedral_angle_1_deg 4.749 r_rigid_bond_restr 2.639 r_mcangle_it 2.628 r_mcbond_it 1.894 r_angle_refined_deg 1.884 r_chiral_restr 0.122 r_bond_refined_d 0.022 r_gen_planes_refined 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1038 Nucleic Acid Atoms Solvent Atoms 143 Heterogen Atoms
Software Software Software Name Purpose XDS data scaling PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling