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Crystal Structure of OTEMO complex with FAD and NADP (form 2)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3UOY PDB ENTRY 3UOY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 295 22% PEG3350, 0.1 M sodium/potassium phosphate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.36 47.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.762 α = 90 b = 95.179 β = 101.82 c = 93.13 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX225HE 2010-12-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.9793 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.407 91.157 95.8 0.105 8.8 2.6 42173
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.407 2.51 91 0.452 2.5 3984
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3UOY 2.407 48.607 42101 2122 95.01 0.1989 0.1964 0.1964 0.2468 0.2457 RANDOM 26.1142
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.22 0.33 0.71 -0.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.693 r_dihedral_angle_3_deg 17.031 r_dihedral_angle_4_deg 16.342 r_dihedral_angle_1_deg 6.648 r_scangle_it 3.126 r_scbond_it 1.938 r_angle_refined_deg 1.576 r_mcangle_it 1.161 r_mcbond_it 0.607 r_chiral_restr 0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.693 r_dihedral_angle_3_deg 17.031 r_dihedral_angle_4_deg 16.342 r_dihedral_angle_1_deg 6.648 r_scangle_it 3.126 r_scbond_it 1.938 r_angle_refined_deg 1.576 r_mcangle_it 1.161 r_mcbond_it 0.607 r_chiral_restr 0.11 r_bond_refined_d 0.014 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8575 Nucleic Acid Atoms Solvent Atoms 243 Heterogen Atoms 202
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection HKL-2000 data reduction MOLREP phasing