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(R)-cEt-BNA decamer structure
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3EY2 PDB entry 3EY2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 291 20 mM sodium cacodylate, 40 mM sodium chloride, 6 mM spermine tetrahydrochloride, 5% v/v MPD, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.13 42.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 26.022 α = 90 b = 44.897 β = 90 c = 44.911 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2010-02-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 1.007 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.42 31.75 98.93 0.062 36.6 7.2 9792 9792
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.42 1.47 94.5 0.574 1.7 4.3 493
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLREP (CCP4) THROUGHOUT PDB entry 3EY2 1.42 31.75 9792 493 98.93 0.14883 0.1461 0.20819 0.2051 RANDOM 16.292
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 0.33 -0.28
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 4.19 r_scbond_it 3.335 r_rigid_bond_restr 2.651 r_angle_refined_deg 2.429 r_chiral_restr 0.154 r_gen_planes_refined 0.033 r_bond_refined_d 0.024
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 408 Solvent Atoms 84 Heterogen Atoms
Software Software Software Name Purpose MD2 data collection CCP4 model building MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling CCP4 phasing