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Asymmetric complex of human neuron specific enolase-5-PGA/PEP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 20% PEG4K, 0.2M MgCl2, 0.1M Tris-HCl, pH 8.5, vapor diffusion, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.32 47.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.557 α = 90 b = 119.819 β = 90 c = 68.14 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2006-04-15 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 50 84.6 0.097 7.7 5.2 150755
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.45 51 0.791 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.4 41.67 131411 6887 77.75 0.21606 0.21354 0.2118 0.26441 0.2633 RANDOM 7.854
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.06 0.05 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.931 r_dihedral_angle_4_deg 19.842 r_dihedral_angle_3_deg 15.305 r_dihedral_angle_1_deg 6.586 r_scangle_it 5.298 r_scbond_it 3.957 r_mcangle_it 2.302 r_angle_refined_deg 2.132 r_rigid_bond_restr 2.12 r_mcbond_it 1.715
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.931 r_dihedral_angle_4_deg 19.842 r_dihedral_angle_3_deg 15.305 r_dihedral_angle_1_deg 6.586 r_scangle_it 5.298 r_scbond_it 3.957 r_mcangle_it 2.302 r_angle_refined_deg 2.132 r_rigid_bond_restr 2.12 r_mcbond_it 1.715 r_chiral_restr 0.145 r_bond_refined_d 0.024 r_gen_planes_refined 0.012 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6620 Nucleic Acid Atoms Solvent Atoms 594 Heterogen Atoms 33
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction SERGUI data collection CNS phasing