☰ Navigation Tabs
Crystal Structure of BACE with Compound 14
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 298 protein in sodium borate, pH 8.5, reservoir: 30% PEG200, 0.1 M sodium acetate, pH 5.2-5.4, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.14 42.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.507 α = 90 b = 104.12 β = 90 c = 99.552 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944+ 2008-11-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 22.834 96.1 0.049 15 4.8 27466
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.02 91.6 0.18 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION RIGID BODY REFINEMENT THROUGHOUT 1.95 22.83 26036 1427 96.11 0.18125 0.17775 0.1847 0.24668 0.2518 RANDOM 17.199
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 -0.07 0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.419 r_dihedral_angle_4_deg 18.617 r_dihedral_angle_3_deg 14.142 r_dihedral_angle_1_deg 8.012 r_scangle_it 5.647 r_scbond_it 3.799 r_mcangle_it 2.443 r_mcbond_it 1.52 r_angle_refined_deg 1.282 r_angle_other_deg 0.753
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.419 r_dihedral_angle_4_deg 18.617 r_dihedral_angle_3_deg 14.142 r_dihedral_angle_1_deg 8.012 r_scangle_it 5.647 r_scbond_it 3.799 r_mcangle_it 2.443 r_mcbond_it 1.52 r_angle_refined_deg 1.282 r_angle_other_deg 0.753 r_mcbond_other 0.5 r_chiral_restr 0.087 r_gen_planes_refined 0.013 r_bond_refined_d 0.012 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3102 Nucleic Acid Atoms Solvent Atoms 380 Heterogen Atoms 41
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction d*TREK data reduction autoBUSTER phasing