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Crystal Structure of BACE with Compound 12
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 298 protein in sodium borate, pH 8.5, reservoir: 30% PEG200, 0.1 M sodium acetate, pH 5.2-5.4, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.11 41.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.504 α = 90 b = 103.865 β = 90 c = 98.462 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944+ 2008-11-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.947 24.754 28312 27069
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION RIGID BODY REFINEMENT THROUGHOUT 1.95 24.75 25664 1404 95.61 0.20454 0.20079 0.27546 0.2462 RANDOM 25.548
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.11 -0.14 0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.785 r_dihedral_angle_3_deg 16.072 r_dihedral_angle_4_deg 15.269 r_dihedral_angle_1_deg 8.63 r_scangle_it 4.936 r_scbond_it 3.407 r_mcangle_it 2.151 r_mcbond_it 1.322 r_angle_refined_deg 1.112 r_angle_other_deg 0.698
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.785 r_dihedral_angle_3_deg 16.072 r_dihedral_angle_4_deg 15.269 r_dihedral_angle_1_deg 8.63 r_scangle_it 4.936 r_scbond_it 3.407 r_mcangle_it 2.151 r_mcbond_it 1.322 r_angle_refined_deg 1.112 r_angle_other_deg 0.698 r_mcbond_other 0.401 r_chiral_restr 0.077 r_gen_planes_refined 0.013 r_bond_refined_d 0.01 r_gen_planes_other 0.001 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3106 Nucleic Acid Atoms Solvent Atoms 302 Heterogen Atoms 45
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction autoBUSTER phasing