3UCL

Cyclohexanone-bound crystal structure of cyclohexanone monooxygenase in the Rotated conformation


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3GWFPDB Entry 3GWF

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP82770.1 M imidazole, 0.2% TMOS, 20% PEG 3350, 0.1 M cyclohexanone, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
1.9235.83

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 55.538α = 90
b = 67.105β = 90
c = 131.409γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray93CCDRIGAKU SATURN 944+VariMax HF2009-08-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-007 HF1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.365097.90.0870.0879.811.2202622026239.4
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.362.4792.70.4720.4728.31870

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB Entry 3GWF2.3630.612021420214206197.350.19830.19830.19090.2644RANDOM28.4441
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.53-0.571.1
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.684
r_dihedral_angle_4_deg18.159
r_dihedral_angle_3_deg17.296
r_dihedral_angle_1_deg7.134
r_scangle_it3.779
r_scbond_it2.303
r_angle_refined_deg1.669
r_mcangle_it1.457
r_mcbond_it0.771
r_chiral_restr0.114
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.684
r_dihedral_angle_4_deg18.159
r_dihedral_angle_3_deg17.296
r_dihedral_angle_1_deg7.134
r_scangle_it3.779
r_scbond_it2.303
r_angle_refined_deg1.669
r_mcangle_it1.457
r_mcbond_it0.771
r_chiral_restr0.114
r_bond_refined_d0.017
r_gen_planes_refined0.008
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3986
Nucleic Acid Atoms
Solvent Atoms121
Heterogen Atoms108

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling