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The crystal structure of Snf1-related kinase 2.3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 298 PEG 8000, ammonium sulfate, pH 6.5, vapor diffusion, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.33 47.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.411 α = 90 b = 75.411 β = 90 c = 116.434 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2010-07-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 1.0 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 92.8 30761 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 28.48 28568 2193 99.91 0.2137 0.2124 0.218 0.2297 0.2361 RANDOM 31.7002
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.11 -0.56 -1.11 1.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.615 r_dihedral_angle_4_deg 17.174 r_dihedral_angle_3_deg 12.714 r_sphericity_free 8.515 r_dihedral_angle_1_deg 4.775 r_sphericity_bonded 4.053 r_scangle_it 3.267 r_scbond_it 1.997 r_mcangle_it 1.735 r_rigid_bond_restr 1.187
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.615 r_dihedral_angle_4_deg 17.174 r_dihedral_angle_3_deg 12.714 r_sphericity_free 8.515 r_dihedral_angle_1_deg 4.775 r_sphericity_bonded 4.053 r_scangle_it 3.267 r_scbond_it 1.997 r_mcangle_it 1.735 r_rigid_bond_restr 1.187 r_angle_refined_deg 1.065 r_mcbond_it 0.955 r_angle_other_deg 0.767 r_mcbond_other 0.235 r_chiral_restr 0.065 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2187 Nucleic Acid Atoms Solvent Atoms 143 Heterogen Atoms 3
Software Software Software Name Purpose DENZO data reduction PHASER phasing REFMAC refinement PDB_EXTRACT data extraction SCALEPACK data scaling