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Formyl-CoA:oxalate CoA-transferase from Acetobacter aceti
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Q6Y PDB ENTRY 1Q6Y
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.8 295 24% w/v PEG4000, 100 mM bicine, pH 8.8, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.42 49.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.164 α = 90 b = 121.612 β = 90 c = 161.377 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD NOIR-1 2006-09-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 4.2.2 1.24 ALS 4.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.992 97.129 89.1 0.124 0.124 10.3 7.4 132275 116900 21.74
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.992 2.1 90.4 0.397 0.397 1.6 8 17212
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 1Q6Y 1.992 39.643 1.36 116882 110993 5889 88.39 0.1981 0.1957 0.1907 0.2425 0.2345 RANDOM 23.4232
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.9051 5.6705 -2.7653
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 16.416 f_angle_d 1.041 f_chiral_restr 0.069 f_bond_d 0.007 f_plane_restr 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13206 Nucleic Acid Atoms Solvent Atoms 983 Heterogen Atoms 192
Software Software Software Name Purpose SCALA data scaling PHENIX refinement PDB_EXTRACT data extraction d*TREK data scaling d*TREK data reduction MOLREP phasing