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Crystal structure of Drosophila N-cadherin EC1-4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 293 9% PEG 3350, 0.05M L-proline, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.37 63.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.499 α = 90 b = 126.656 β = 90 c = 62.009 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2009-03-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4C NSLS X4C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 20 99.1 18088 1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.7 20 17573 17118 919 99.2 0.209 0.206 0.2069 0.276 0.2783 RANDOM 62.132
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.18 1.85 -4.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.017 r_dihedral_angle_3_deg 17.464 r_dihedral_angle_4_deg 17.329 r_dihedral_angle_1_deg 6.125 r_scangle_it 1.651 r_angle_refined_deg 1.231 r_scbond_it 0.968 r_mcangle_it 0.68 r_mcbond_it 0.387 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.017 r_dihedral_angle_3_deg 17.464 r_dihedral_angle_4_deg 17.329 r_dihedral_angle_1_deg 6.125 r_scangle_it 1.651 r_angle_refined_deg 1.231 r_scbond_it 0.968 r_mcangle_it 0.68 r_mcbond_it 0.387 r_nbtor_refined 0.305 r_nbd_refined 0.204 r_symmetry_vdw_refined 0.181 r_metal_ion_refined 0.174 r_symmetry_hbond_refined 0.163 r_xyhbond_nbd_refined 0.149 r_chiral_restr 0.08 r_bond_refined_d 0.01 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3233 Nucleic Acid Atoms Solvent Atoms 153 Heterogen Atoms 6
Software Software Software Name Purpose MAR345 data collection PHASER phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling