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Periplasmic portion of the Helicobacter pylori chemoreceptor TlpB with hydroxyurea bound
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277 0.1 M Bis-Tris pH 7.0, 2.0 M ammonium sulfate, vapor diffusion, hanging drop, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.71 66.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.611 α = 90 b = 81.539 β = 90 c = 94.554 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Rh/Pt coated Si 2008-11-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 0.97 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.42 50 97.6 0.062 13.1 3.5 116572 113775 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.42 1.45 91.5 0.394 2.6 7066
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.42 40.65 113696 113696 5716 97.88 0.1338 0.1338 0.1326 0.1425 0.1567 0.1654 RANDOM 17.1805
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.07 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.313 r_sphericity_free 17.137 r_dihedral_angle_3_deg 11.247 r_sphericity_bonded 7.67 r_scangle_it 7.542 r_dihedral_angle_4_deg 6.839 r_scbond_it 5.756 r_dihedral_angle_1_deg 5.597 r_mcangle_it 3.627 r_rigid_bond_restr 2.886
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.313 r_sphericity_free 17.137 r_dihedral_angle_3_deg 11.247 r_sphericity_bonded 7.67 r_scangle_it 7.542 r_dihedral_angle_4_deg 6.839 r_scbond_it 5.756 r_dihedral_angle_1_deg 5.597 r_mcangle_it 3.627 r_rigid_bond_restr 2.886 r_mcbond_it 2.669 r_angle_refined_deg 1.593 r_mcbond_other 1.372 r_angle_other_deg 0.969 r_chiral_restr 0.112 r_bond_refined_d 0.017 r_gen_planes_refined 0.01 r_gen_planes_other 0.001 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2562 Nucleic Acid Atoms Solvent Atoms 473 Heterogen Atoms 55
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction EPMR phasing