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Crystal structure of YwfH, NADPH dependent reductase involved in Bacilysin biosynthesis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 7.5 293 0.1M HEPES, 1.4M Tri-sodium citrate dihydrate, pH 7.5, Microbatch, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.15 42.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.85 α = 90 b = 136.99 β = 117.99 c = 66.7 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD bent collimating mirror and toroid 2010-12-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 1.00 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 68.5 99.1 0.089 13.4 7.6 103248 102319 2 4.1 23.756
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.84 100 0.487 4.1 7.6 15067
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.75 68.5 4.1 2 103248 97097 5117 99.03 0.19044 0.19044 0.18876 0.1875 0.2218 0.2213 RANDOM 28.702
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.4 -0.61 -0.19 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.75 r_dihedral_angle_4_deg 20.272 r_dihedral_angle_3_deg 13.156 r_scangle_it 4.904 r_dihedral_angle_1_deg 4.783 r_scbond_it 2.883 r_mcangle_it 2.312 r_rigid_bond_restr 1.353 r_mcbond_it 1.236 r_angle_refined_deg 0.999
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.75 r_dihedral_angle_4_deg 20.272 r_dihedral_angle_3_deg 13.156 r_scangle_it 4.904 r_dihedral_angle_1_deg 4.783 r_scbond_it 2.883 r_mcangle_it 2.312 r_rigid_bond_restr 1.353 r_mcbond_it 1.236 r_angle_refined_deg 0.999 r_chiral_restr 0.073 r_bond_refined_d 0.007 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7519 Nucleic Acid Atoms Solvent Atoms 410 Heterogen Atoms
Software Software Software Name Purpose MAR345dtb data collection PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling