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Crystal Structure of an Enzyme Redesigned Through Multiplayer Online Gaming: CE6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 291 100mM HEPES pH 7.5, 2% v/v PEG-400, 2.0M (NH4)2SO4; 25mM HEPES pH 7.25, 100mM NaCl, 5% glycerol (mother liquor); A solution was prepared of CE6 (15mg/ml) in protein buffer with a 1:10,000 molar ratio of Bovine Pancreatic Trypsin (Sigma T1426) added about 25 minutes prior to setting drops (protein buffer), VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 4.13 70.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.002 α = 90 b = 87.002 β = 90 c = 163.33 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2011-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 0.97740 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 50 100 0.07 20.5 12.8 37384 37384
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.69 100 0.416 9.9 3702
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.6 46.15 37337 37337 1870 0.17194 0.17194 0.17051 0.1667 0.19805 0.1951 RANDOM 44.9428
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.29 0.29 -0.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.166 r_dihedral_angle_4_deg 21.013 r_dihedral_angle_3_deg 14.152 r_dihedral_angle_1_deg 6.546 r_scangle_it 3.22 r_scbond_it 1.866 r_angle_refined_deg 1.348 r_mcangle_it 1.105 r_mcbond_it 0.548 r_chiral_restr 0.091
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.166 r_dihedral_angle_4_deg 21.013 r_dihedral_angle_3_deg 14.152 r_dihedral_angle_1_deg 6.546 r_scangle_it 3.22 r_scbond_it 1.866 r_angle_refined_deg 1.348 r_mcangle_it 1.105 r_mcbond_it 0.548 r_chiral_restr 0.091 r_bond_refined_d 0.012 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5090 Nucleic Acid Atoms Solvent Atoms 240 Heterogen Atoms 98
Software Software Software Name Purpose SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection DENZO data reduction