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Crystal structure of the complex of Human Chromobox Homolog 3 (CBX3)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 300 peg, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 300K
Crystal Properties Matthews coefficient Solvent content 3.64 66.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.209 α = 90 b = 92.209 β = 90 c = 92.209 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray IMAGE PLATE RIGAKU RAXIS IV si 2009-10-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E DW 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.81 40 98.3 12066 12066
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.81 29.16 11460 11460 575 99.76 0.20029 0.20029 0.1987 0.1943 0.23115 0.226 RANDOM 19.509
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.748 r_dihedral_angle_3_deg 13.114 r_dihedral_angle_4_deg 9.478 r_dihedral_angle_1_deg 5.798 r_scangle_it 4.244 r_scbond_it 2.939 r_mcangle_it 1.779 r_angle_refined_deg 1.629 r_mcbond_it 1.315 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.748 r_dihedral_angle_3_deg 13.114 r_dihedral_angle_4_deg 9.478 r_dihedral_angle_1_deg 5.798 r_scangle_it 4.244 r_scbond_it 2.939 r_mcangle_it 1.779 r_angle_refined_deg 1.629 r_mcbond_it 1.315 r_nbtor_refined 0.309 r_nbd_refined 0.293 r_xyhbond_nbd_refined 0.165 r_symmetry_vdw_refined 0.142 r_symmetry_hbond_refined 0.133 r_chiral_restr 0.119 r_bond_refined_d 0.019 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 579 Nucleic Acid Atoms Solvent Atoms 79 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling