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The Structure of a putative ABC-transporter periplasmic component from Rhodopseudomonas palustris
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 297 0.1M Bis-Tris Propane:NaOH pH 7.0, 2.5M Amonium Sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 297K
Crystal Properties Matthews coefficient Solvent content 1.93 36.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.564 α = 90 b = 68.668 β = 90 c = 90.779 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2011-04-18 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97921, 0.97935 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 50 99.8 0.075 10.8 8.6 49224 49224 -3 18.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.53 99.9 0.459 7.9 2464
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.5 50 49034 49034 2483 99.38 0.14 0.14 0.137 0.1366 0.1981 0.1964 RANDOM 24.7198
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.34 0.3 0.04
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 42.23 r_dihedral_angle_2_deg 33.208 r_sphericity_bonded 16.176 r_dihedral_angle_4_deg 13.642 r_dihedral_angle_3_deg 13.547 r_dihedral_angle_1_deg 5.775 r_rigid_bond_restr 4.1 r_angle_refined_deg 1.696 r_angle_other_deg 0.997 r_chiral_restr 0.102
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 42.23 r_dihedral_angle_2_deg 33.208 r_sphericity_bonded 16.176 r_dihedral_angle_4_deg 13.642 r_dihedral_angle_3_deg 13.547 r_dihedral_angle_1_deg 5.775 r_rigid_bond_restr 4.1 r_angle_refined_deg 1.696 r_angle_other_deg 0.997 r_chiral_restr 0.102 r_bond_refined_d 0.015 r_gen_planes_refined 0.009 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2703 Nucleic Acid Atoms Solvent Atoms 400 Heterogen Atoms 32
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing SHELXD phasing SHELXE model building MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing ARP/wARP model building CCP4 phasing O model building Coot model building