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Exhaustive Fluorine Scanning towards Potent p53-MDM2 Antagonist
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.8 277 0.1 M sodium acetate
18% PEG 4000
, pH 4.8, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.47 50.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.95 α = 90 b = 59.25 β = 90 c = 82.95 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 PIXEL DECTRIS PILATUS 6M 2011-02-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 50 16540 12505
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.75 97.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.603 20 16540 11877 628 75.72 0.20642 0.20455 0.2081 0.24455 0.2432 RANDOM 18.255
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.95 -2.24 1.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.527 r_dihedral_angle_4_deg 19.314 r_dihedral_angle_3_deg 14.968 r_dihedral_angle_1_deg 5.474 r_scangle_it 2.517 r_sphericity_free 2.096 r_scbond_it 1.522 r_angle_refined_deg 1.467 r_sphericity_bonded 1.17 r_mcangle_it 1.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.527 r_dihedral_angle_4_deg 19.314 r_dihedral_angle_3_deg 14.968 r_dihedral_angle_1_deg 5.474 r_scangle_it 2.517 r_sphericity_free 2.096 r_scbond_it 1.522 r_angle_refined_deg 1.467 r_sphericity_bonded 1.17 r_mcangle_it 1.05 r_angle_other_deg 0.899 r_rigid_bond_restr 0.793 r_mcbond_it 0.569 r_chiral_restr 0.248 r_mcbond_other 0.175 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 750 Nucleic Acid Atoms Solvent Atoms 116 Heterogen Atoms 33
Software Software Software Name Purpose MAR345 data collection XFIT data reduction REFMAC refinement XDS data reduction XSCALE data scaling