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Structure of the F413E variant of E. coli KatE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GGE PDB ENTRY 1GGE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 293 17% PEG3350, 1.6 M lithium chloride, 0.1 M Tris, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.13 42.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.49 α = 90 b = 132.85 β = 109.36 c = 122.68 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD mirrors 2009-07-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.97934 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.62 31.249 87.1 0.085 9.2 3.6 357284 311218 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.62 1.71 89.3 0.581 0.581 1.3 3.4 46552
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1GGE 1.62 31.249 311218 311218 15716 87.09 0.1585 0.1585 0.1564 0.1555 0.1992 0.198 RANDOM 17.3398
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.57 0.65 -0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.707 r_dihedral_angle_4_deg 15.364 r_dihedral_angle_3_deg 14.435 r_dihedral_angle_1_deg 6.505 r_scangle_it 4.466 r_scbond_it 2.903 r_angle_refined_deg 2.088 r_mcangle_it 1.887 r_mcbond_it 1.207 r_chiral_restr 0.186
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.707 r_dihedral_angle_4_deg 15.364 r_dihedral_angle_3_deg 14.435 r_dihedral_angle_1_deg 6.505 r_scangle_it 4.466 r_scbond_it 2.903 r_angle_refined_deg 2.088 r_mcangle_it 1.887 r_mcbond_it 1.207 r_chiral_restr 0.186 r_bond_refined_d 0.026 r_gen_planes_refined 0.013
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 22956 Nucleic Acid Atoms Solvent Atoms 2834 Heterogen Atoms 172
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MxDC data collection MOSFLM data reduction REFMAC phasing