☰ Navigation Tabs
Crystal structure of E. coli HypF with ATP and Carbamoyl phosphate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 0.1 M HEPES, pH 8.5, 20 mM magnesium chloride, 2.5% w/v isopropanol, 10% w/v ethylene glycol, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.57 52.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.53 α = 90 b = 78.287 β = 90 c = 200.815 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-300 2010-10-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 1.28248 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 100.41 29549
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.4 100.41 25761 1351 91.78 0.1577 0.15381 0.23282 0.2348 RANDOM 24.039
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.57 0.73 -1.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.229 r_dihedral_angle_3_deg 16.453 r_dihedral_angle_4_deg 15.746 r_dihedral_angle_1_deg 6.576 r_scangle_it 4.69 r_scbond_it 3.018 r_mcangle_it 1.881 r_angle_refined_deg 1.85 r_rigid_bond_restr 1.73 r_mcbond_it 1.142
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.229 r_dihedral_angle_3_deg 16.453 r_dihedral_angle_4_deg 15.746 r_dihedral_angle_1_deg 6.576 r_scangle_it 4.69 r_scbond_it 3.018 r_mcangle_it 1.881 r_angle_refined_deg 1.85 r_rigid_bond_restr 1.73 r_mcbond_it 1.142 r_nbtor_refined 0.307 r_nbd_refined 0.22 r_xyhbond_nbd_refined 0.184 r_symmetry_vdw_refined 0.167 r_symmetry_hbond_refined 0.158 r_chiral_restr 0.126 r_bond_refined_d 0.021 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4929 Nucleic Acid Atoms Solvent Atoms 378 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MxDC data collection