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Mouse Lin28A in complex with let-7f-1 microRNA pre-element
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3TRZ PDB ENTRY 3TRZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 298 0.6M NaH2PO4, 1.4M K2HPO4, pH 7, vapor diffusion, temperature 298K
Crystal Properties Matthews coefficient Solvent content 4.48 72.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 139.88 α = 90 b = 139.88 β = 90 c = 85.55 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-09-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 1 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.763 72.98 100 0.06 0.06 28.2 8 22328 22328 -3 78.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.763 2.772 100 0.629 0.629 3.3 8.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3TRZ 2.763 72.98 22279 22279 1148 99.6 0.1941 0.1941 0.193 0.1953 0.2145 0.2217 RANDOM 74.7989
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation t_angle_deg 1.36 t_bond_d 0.01 t_dihedral_angle_d t_trig_c_planes t_gen_planes t_it t_nbd t_improper_torsion t_pseud_angle t_chiral_improper_torsion
RMS Deviations Key Refinement Restraint Deviation t_angle_deg 1.36 t_bond_d 0.01 t_dihedral_angle_d t_trig_c_planes t_gen_planes t_it t_nbd t_improper_torsion t_pseud_angle t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2080 Nucleic Acid Atoms 984 Solvent Atoms Heterogen Atoms 4
Software Software Software Name Purpose BUSTER-TNT refinement PDB_EXTRACT data extraction ADSC data collection XDS data reduction autoPROC data scaling SCALA data scaling PHASER phasing BUSTER refinement