☰ Navigation Tabs
Crystal structure of human mitochondrial transcription factor A, TFAM or mtTFA, bound to the light strand promoter LSP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.2 293.15 37.5% (v/v) PEG1000, 300 mM sodium chloride, 0.1 M Na,K-phosphate, pH 6.2, VAPOR DIFFUSION, SITTING DROP, temperature 293.15K
Crystal Properties Matthews coefficient Solvent content 2.4 48.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 113.9 α = 90 b = 117.2 β = 90 c = 56.53 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD Focusing mirrors: one pair of (300x40x15) mm3 long Pt coated Si mirror, 260mm usable, in a Kirkpatrick-Baez geometry; 2010-11-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.87260 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.45 40.84 99.8 0.08 0.049 8.2 7 28529 1.5 1.6 59.217
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.45 2.57 100 0.467 0.467 4.2 7.4 30350
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.45 40.84 2954 28483 992 0.1832 0.1816 0.1876 0.2283 0.239 RANDOM 41.79
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.9362 -8.0574 4.1212
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 20.65 t_it 20 t_gen_planes 5 t_nbd 5 t_chiral_improper_torsion 5 t_ideal_dist_contact 4 t_omega_torsion 2.83 t_dihedral_angle_d 2 t_trig_c_planes 2 t_angle_deg 1.4
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 20.65 t_it 20 t_gen_planes 5 t_nbd 5 t_chiral_improper_torsion 5 t_ideal_dist_contact 4 t_omega_torsion 2.83 t_dihedral_angle_d 2 t_trig_c_planes 2 t_angle_deg 1.4 t_utility_distance 1 t_bond_d 0.012
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3237 Nucleic Acid Atoms 1792 Solvent Atoms 186 Heterogen Atoms 28
Software Software Software Name Purpose ADSC data collection MOLREP phasing BUSTER refinement XDS data reduction SCALA data scaling