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Crystal structure of the basic protease BprB from the ovine footrot pathogen, Dichelobacter nodosus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 293 PEG 1500, pH 6.5, vapor diffusion, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.94 36.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.462 α = 90 b = 90.514 β = 109.99 c = 44.06 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS mirrors 2007-06-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R 1.542
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 45.27 26267 24768
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 24.383 24768 1258 94.26 0.1591 0.1565 0.1578 0.2067 0.2048 RANDOM 12.461
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.22 0.03 0.25 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.576 r_dihedral_angle_4_deg 16.28 r_dihedral_angle_3_deg 12.925 r_dihedral_angle_1_deg 5.466 r_scangle_it 3.709 r_scbond_it 2.6 r_mcangle_it 1.296 r_angle_refined_deg 1.054 r_mcbond_it 0.696 r_nbtor_refined 0.298
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.576 r_dihedral_angle_4_deg 16.28 r_dihedral_angle_3_deg 12.925 r_dihedral_angle_1_deg 5.466 r_scangle_it 3.709 r_scbond_it 2.6 r_mcangle_it 1.296 r_angle_refined_deg 1.054 r_mcbond_it 0.696 r_nbtor_refined 0.298 r_nbd_refined 0.195 r_symmetry_vdw_refined 0.155 r_symmetry_hbond_refined 0.108 r_xyhbond_nbd_refined 0.094 r_metal_ion_refined 0.081 r_chiral_restr 0.071 r_bond_refined_d 0.008 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2494 Nucleic Acid Atoms Solvent Atoms 460 Heterogen Atoms 10
Software Software Software Name Purpose SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction CrystalClear data collection MOSFLM data reduction