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Structure of SH3 chimera with a type II ligand linked to the chain C-terminal
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SHG PDB ENTRY 1SHG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 295 2M ammonium sulfate, 20 mM sodium acetate trihydrate, 5mM B-mercaptoethanol, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.33 47.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.38 α = 90 b = 36.38 β = 90 c = 112.14 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2005-10-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X12 1.072 EMBL/DESY, HAMBURG X12
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 30 97.9 0.036 0.039 23.5 5.48 18279 17902
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.8 94.4 0.523 0.391 3.49 5.26 2892
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1SHG 1.7 27.47 18279 16972 929 97.95 0.18076 0.1796 0.1769 0.20113 0.1966 RANDOM 33.111
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.76 1.76 -3.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.8 r_dihedral_angle_4_deg 15.485 r_dihedral_angle_3_deg 14.874 r_dihedral_angle_1_deg 5.186 r_scangle_it 1.903 r_scbond_it 1.095 r_angle_refined_deg 1.016 r_mcangle_it 0.95 r_mcbond_it 0.518 r_chiral_restr 0.065
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.8 r_dihedral_angle_4_deg 15.485 r_dihedral_angle_3_deg 14.874 r_dihedral_angle_1_deg 5.186 r_scangle_it 1.903 r_scbond_it 1.095 r_angle_refined_deg 1.016 r_mcangle_it 0.95 r_mcbond_it 0.518 r_chiral_restr 0.065 r_bond_refined_d 0.006 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1040 Nucleic Acid Atoms Solvent Atoms 45 Heterogen Atoms 13
Software Software Software Name Purpose XDS data scaling PHASER phasing REFMAC refinement XDS data reduction