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structure of the regulatory fragment of sacchromyces cerevisiae ampk in complex with NADH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 291 1M Succinic Acid, 0.1M Hepes, 1% w/v Polyethylene glycol monomethyl ether 2000, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.25 62.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.732 α = 90 b = 240.236 β = 90 c = 79.183 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-01-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.9795 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 30 99.84 30340 30327 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 99.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 25 30327 1618 99.84 0.24277 0.24064 0.2339 0.28087 0.2724 RANDOM 48.014
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.37 -0.18 -1.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.581 r_dihedral_angle_3_deg 16.023 r_dihedral_angle_4_deg 14.926 r_dihedral_angle_1_deg 4.785 r_scangle_it 1.54 r_angle_refined_deg 1.004 r_scbond_it 0.862 r_mcangle_it 0.859 r_mcbond_it 0.467 r_chiral_restr 0.062
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.581 r_dihedral_angle_3_deg 16.023 r_dihedral_angle_4_deg 14.926 r_dihedral_angle_1_deg 4.785 r_scangle_it 1.54 r_angle_refined_deg 1.004 r_scbond_it 0.862 r_mcangle_it 0.859 r_mcbond_it 0.467 r_chiral_restr 0.062 r_bond_refined_d 0.007 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4365 Nucleic Acid Atoms Solvent Atoms 214 Heterogen Atoms 44
Software Software Software Name Purpose GDA data collection PHASER phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling