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Computationally designed two-fold symmetric Tim-barrel protein, FLR
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model Other COMPUTATIONAL MODEL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 4.2 291 20% PEG 1000, 0.1M SODIUM CITRATE, 0.1 M AMMONIUM CHLORIDE, pH 4.2, Microbatch, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.07 40.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.222 α = 90 b = 67.222 β = 90 c = 124.658 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2009-11-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 12.3.1 ALS 12.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 50 98 0.072 19.35 9.7 63971 21
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.45 96.9 0.683 3.01 9.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT COMPUTATIONAL MODEL 1.4 42.5 60459 3264 97.9 0.159 0.157 0.1653 0.193 0.1978 RANDOM 21.27
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.31 -4.31 8.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.021 r_dihedral_angle_4_deg 18.903 r_dihedral_angle_3_deg 12.629 r_scangle_it 7.332 r_dihedral_angle_1_deg 5.463 r_scbond_it 5.273 r_mcangle_it 4.311 r_mcbond_it 2.916 r_rigid_bond_restr 2.353 r_angle_refined_deg 1.814
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.021 r_dihedral_angle_4_deg 18.903 r_dihedral_angle_3_deg 12.629 r_scangle_it 7.332 r_dihedral_angle_1_deg 5.463 r_scbond_it 5.273 r_mcangle_it 4.311 r_mcbond_it 2.916 r_rigid_bond_restr 2.353 r_angle_refined_deg 1.814 r_angle_other_deg 1.096 r_mcbond_other 0.981 r_chiral_restr 0.146 r_bond_refined_d 0.023 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2719 Nucleic Acid Atoms Solvent Atoms 259 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling