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Computationally designed TIM-barrel protein, HalfFLR
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model Other COMPUTATIONAL MODEL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 4.2 291 20% PEG 1000, 0.1M SODIUM CITRATE, 0.1M AMMONIUM CHLORIDE, pH 4.2, Microbatch, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.36 47.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.493 α = 90 b = 60.493 β = 90 c = 140.2 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2009-11-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 36.98 99.9 0.074 33.66 15 19865 57.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.44 100 0.32 8.48 12.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT COMPUTATIONAL MODEL 2.4 36.98 18627 1011 99.7 0.244 0.242 0.2371 0.288 0.2793 RANDOM 82.29
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 11.09 11.09 -22.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.298 r_dihedral_angle_4_deg 20.95 r_dihedral_angle_3_deg 18.661 r_scangle_it 8.249 r_mcangle_it 7.033 r_dihedral_angle_1_deg 6.958 r_scbond_it 5.155 r_mcbond_it 4.337 r_rigid_bond_restr 2.679 r_angle_refined_deg 2.139
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.298 r_dihedral_angle_4_deg 20.95 r_dihedral_angle_3_deg 18.661 r_scangle_it 8.249 r_mcangle_it 7.033 r_dihedral_angle_1_deg 6.958 r_scbond_it 5.155 r_mcbond_it 4.337 r_rigid_bond_restr 2.679 r_angle_refined_deg 2.139 r_chiral_restr 0.132 r_bond_refined_d 0.024 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3598 Nucleic Acid Atoms Solvent Atoms 66 Heterogen Atoms 20
Software Software Software Name Purpose MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling