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Crystal structure of Septin 7 in complex with GDP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9.5 293 0.2M sodium chlorid, 1.1M ammonium sulfate, 0.1M CHES, pH 9.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.29 62.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.363 α = 90 b = 82.363 β = 90 c = 210.598 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2009-08-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.99986 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.3 71.25 99.1 8.9 12190 12079
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.3 3.4 98.9 0.392 0.596 3.85 9.1 1007
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.3 71.25 12079 11498 581 99.28 0.28696 0.28536 0.2965 0.31826 0.3079 RANDOM 68.02
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -6.8 -3.4 -6.8 10.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.969 r_dihedral_angle_3_deg 14.222 r_dihedral_angle_4_deg 14.082 r_dihedral_angle_1_deg 4.042 r_angle_refined_deg 0.912 r_mcangle_it 0.682 r_mcbond_it 0.379 r_nbtor_refined 0.294 r_nbd_refined 0.165 r_scangle_it 0.129
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.969 r_dihedral_angle_3_deg 14.222 r_dihedral_angle_4_deg 14.082 r_dihedral_angle_1_deg 4.042 r_angle_refined_deg 0.912 r_mcangle_it 0.682 r_mcbond_it 0.379 r_nbtor_refined 0.294 r_nbd_refined 0.165 r_scangle_it 0.129 r_symmetry_vdw_refined 0.109 r_xyhbond_nbd_refined 0.096 r_symmetry_hbond_refined 0.09 r_scbond_it 0.079 r_chiral_restr 0.056 r_bond_refined_d 0.006 r_gen_planes_refined 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3783 Nucleic Acid Atoms Solvent Atoms 2 Heterogen Atoms 56
Software Software Software Name Purpose PRO data collection MOLREP phasing REFMAC refinement XDS data reduction XSCALE data scaling